CDS

Accession Number TCMCG006C10868
gbkey CDS
Protein Id XP_022565772.1
Location join(3417043..3417111,3417207..3417440,3417525..3417614,3417694..3417777,3417870..3417920,3417998..3418090,3418164..3418304,3418378..3418458,3418540..3418775,3418843..3419014,3419093..3419205,3419280..3419337,3419420..3419485,3419556..3419768,3419846..3420271,3420340..3420434,3420999..3421241,3421316..3421779,3421877..3422230,3422312..3422505)
Gene LOC106427344
GeneID 106427344
Organism Brassica napus

Protein

Length 1158aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_022710051.1
Definition tetratricopeptide repeat protein SKI3-like isoform X1 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category A
Description Tetratricopeptide repeat
KEGG_TC -
KEGG_Module M00392        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
KEGG_ko ko:K12600        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03018        [VIEW IN KEGG]
map03018        [VIEW IN KEGG]
GOs GO:0000184        [VIEW IN EMBL-EBI]
GO:0000288        [VIEW IN EMBL-EBI]
GO:0000291        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000956        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006401        [VIEW IN EMBL-EBI]
GO:0006402        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009056        [VIEW IN EMBL-EBI]
GO:0009057        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019439        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034427        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034655        [VIEW IN EMBL-EBI]
GO:0035327        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043928        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044248        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044265        [VIEW IN EMBL-EBI]
GO:0044270        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046700        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0055087        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070478        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901361        [VIEW IN EMBL-EBI]
GO:1901575        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAATTGGAGCAGCTGGAGAAGTCCGTGGAAGCCAACCCAGACGACCCTTCTCTGCAATTCGAACTTGGTTTGTATCTGTGGGAACGCGGCGGAGACTCGGAGAGAGCGGCGGAGCATTTCGTTCTGTCGGCGAAGCTAAACCCTGACAATGCATCTGCGTTCAAGTACTTAGGGCATTACTACTCGCGCGTGACGCTTGATCGCAATCGAGCTGCCAAGTGTTACCAGAGAGCGGTGCTGCTGAACGTTAATGACTCTGAGTCTGGAGAGGCTCTTTGTGATTTGTTGGATGGGCAAGGGAAAGAGATCTTGGAAGTTGCGGTTTGCCGTGACGCTTCTGAGAAGTCTCCCAAGGCTTTCTGGGCGTTTTGCAGATTGGGTTACATTCAGCTTCATCAGAAGAAGTGGTCTGAAGCTGTTCAGAGCCTTCAACATGCTATTAGAGGCTATCCTACAGTGTCTGACCTATGGGAAGCTCTTGGCCTTGCTTACCAGCGACTTGGAATGTTTACTGCTGCTATCAAGGCGTATGGGCGTGCCATTGAATTAGATGAGACCAAGATTTTTGCATTAGTGGAGAGCGCAAACATCTTTTTGATGCTTGGTTCATATAGAAAGGGTGTGGAGCTCTTTGAGCAAGCGCTGAAGATTTCACCTCAGAATATTTCTGTGCTCTATGGTCTTGCTTCTGGATTGCTTAGTTGGTCAAAGGAATGCATAGATCTGGGCGCATTTGGATGGGCTGCTTCGTTATTGGAGGATGCTCGTAAAGCTGCAAAGGAAAGCACTGCACTGGCCAGCAACATGTCTTCTATATGGAAACTGCATGGAGATATCCAGCTTACGTTTGCAAGATGCTTTCCATGGTCTGGAGGAACTGAAAACTCAGAAAAGACATTTAATGATTCAATACTTTCTTGGAGAAGCGTTTGTTACTCAGCTGCACTCTCAGCCAAATCTTCTTACCAGCGAGCTCTACACTTAGCCCCTTGGCAAGCCAATCTTTATACTGACATAGCCATAGCCTGTGATCTCGTTTCAAGCTTAACCGATGTTTCTGAAACTTCAAGTTCTTGGAAGCTACCTGAAAAGATGGCTCTGGGAGCGTTATTACTTGAATGCGACAACTCGGAGTTTTGGGTTGCTTTGGGTTGTATGTCTGATAACAGTGCTTTGAAACTACATGCTTTGATCAGGGCGTTGCATTTGGATGTATCTTTAGCCGTTGCTTGGGCTTTTATGGGCCAGATCTTCAGGGAATCAGATGAAATGAAACTGGCAAAGCAGGCTTTTGACTGTGCTAGAAGCATAGATCCTACACTTGCTCTACCTTGGGCCGGCTCAGCTGATACTTATGCTAGGGAGTCCACATCAGATGAGGCTTTTGAGAGTTGTTTACGAGCTGCGCAGATATCACCTCTTGCGGAGTACCAGGTTGGTTTGGCATGGCTTGCTTTGCTACAAGGAAGTATCTCATCTCCGCAGATTTTCGCTTGCATTGACCAGGCGGTGCAGCGCACCCCTGACTACCCTGAATCCCATAACCTCCACGGGCTAGTCTGCGAGGCAAGACATAACTATCACACTGCCATTGCTTCATACAGGCTAGCACTGGCTGCAATGAGTGTTTGCCCAGACAGTTCAGTGAAATCTCAGGCTGTAAAAATATCTATCAACTTGGTCAGGTCACTCAGCAAGGCAGGACGTTTCAAAGAATCTGCCAAGGAATGCGCAAATCTGAAGTCAAAATGTTTGCTTGATGCTGGAGCCTTGCAAATCTACGCCTTCTCTCTGTGGAAGATCGGTGAGAACGATTCGGCTCTCTCAGTGGTTCGGGAGCTCGCTGGTAGGATCTCCACAATGGAGAAAACCTCAATAGCTTTCCCAATCAGCTTCATCTGCAGTCTGCTTTACTGCATATCTGGACTTGATTCTGCTATCACCAGCATCCAGAAAATGCCCAAAGAGTTCTTCCAGAGTTCGAAAATCAGCTTTATAGTATCCGCCATCCATGCTCTTGACCAGAGTGATAGGCTTCAGACGATTGTTGCGAGCACTCGTAGCTACATAACATCACAAGAAGAGATAGCTGCGATGCACTATTTGATAGCACTCAGCAAACTGCTGAAAACTGGAGAAGGAGAGTTCCTTGGATTTGAGAAGGGGATTGCACACCTCAGGAAAGCTCTGCATATGTATCCTCATAGTAATTTGTTAAGGAACCTGCTTGGATATATTTTGTTAGCTGGTGAAGGAACCAAAGAGGTCTGTGCTGCTAGTAGATGCTCTATCATAAACGTCTCCGAGTGTGGAAACAAGGAAGGTCTGAAGTCTGCGTTGGAAGTCCTTGGTGGAGGATCGGTTGCTTGCAATGTAATCGGCAACACTGCTCCAAGGTTCTCTTTCCCAACATGCCATTGTCAGAGTCTGAATGCTCCTGTTGTCGTTGCGGAACTGCAAAGATTCTTGCATCAAGAGCCTTGGAACAGCGATGTGAGATACTTGCTGATTCTGAATCTCATGCAGAAGGCTCGTGAGCAGAGGTTCCCTAGACAGCTTTGCAGTGCTATTGAGCGTTTAATCTCCGTGGCGCTCTCTGATGAGGCGTCTGGATATCAAAAGCTCCAGCTTCTGCTTTGTGCTTCCGAGATGAGTTTGCAGAAGGGAGATACAGCAGAGTCTATTGACCATGCTCGAAAGGCTTCTTCCCTTTCCCTTCCAGGTAGCTACCTGTTTCTATCACATTTGCAGCTTTGCCGTGTCTATGCATCAAAGGGAAGCACCAGAGACATGCAAGAGGAGTACAAAGCGTGTTTGGAGCTCAAGACAGACTCAAACATTGGTTGGATCTGCCTGAAGCTCATGGAATCTCAGTTTGATCTGGAGGCTGACGCTAACCTCTTGGAGATGATGAGCCCACCAAGCCAGAATCATTCATGGAAAGAGTGGATGGCTGTTTACAGTCTAGCTCTTGGCTTAGTTTCTTCCGGGAAAAAAGATTTCTCCTCAGCGGAGGAGTTTCTTGCACAAGCTTGCTCGTTGGGTGATTCAGAGAGTTGTCTACTTCTCTGCCATGGTGCCGTCTGCATGGAGCTGGCTAGACAGTCTAACGACTCGCATTTCCTTTCGCTAGCTGTAACGAGTCTAAGCAAAGTTCAAGCGAGGTCGTTTACTCCTTTGCCTATTGTCTATGCTTTATTGGCTCAAGCACATGGGAGTCTTGGCTCTAAAGAGAAGTGGAAGAAGAATCTCCGTCTTGAATGGTTCTGCTGGCCACCAGAGATGAGACCTGCAGAGGTTTACTTTCAGATGCATATACTTGCAAGAGAATCAGAAGAAAGACCTGAAACAACTTCAGGGATTGAAAACTGTCAAACCTCTGAGAAATGGGTGCTTAGGGCGATTCACACTAACCCTTCTTGTATGAGATACTGGAACGTCTTGGATAAGCTTGTTCAGTATCCCATTAGCTAA
Protein:  
MELEQLEKSVEANPDDPSLQFELGLYLWERGGDSERAAEHFVLSAKLNPDNASAFKYLGHYYSRVTLDRNRAAKCYQRAVLLNVNDSESGEALCDLLDGQGKEILEVAVCRDASEKSPKAFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGRAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKECIDLGAFGWAASLLEDARKAAKESTALASNMSSIWKLHGDIQLTFARCFPWSGGTENSEKTFNDSILSWRSVCYSAALSAKSSYQRALHLAPWQANLYTDIAIACDLVSSLTDVSETSSSWKLPEKMALGALLLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQIFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAEYQVGLAWLALLQGSISSPQIFACIDQAVQRTPDYPESHNLHGLVCEARHNYHTAIASYRLALAAMSVCPDSSVKSQAVKISINLVRSLSKAGRFKESAKECANLKSKCLLDAGALQIYAFSLWKIGENDSALSVVRELAGRISTMEKTSIAFPISFICSLLYCISGLDSAITSIQKMPKEFFQSSKISFIVSAIHALDQSDRLQTIVASTRSYITSQEEIAAMHYLIALSKLLKTGEGEFLGFEKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEVCAASRCSIINVSECGNKEGLKSALEVLGGGSVACNVIGNTAPRFSFPTCHCQSLNAPVVVAELQRFLHQEPWNSDVRYLLILNLMQKAREQRFPRQLCSAIERLISVALSDEASGYQKLQLLLCASEMSLQKGDTAESIDHARKASSLSLPGSYLFLSHLQLCRVYASKGSTRDMQEEYKACLELKTDSNIGWICLKLMESQFDLEADANLLEMMSPPSQNHSWKEWMAVYSLALGLVSSGKKDFSSAEEFLAQACSLGDSESCLLLCHGAVCMELARQSNDSHFLSLAVTSLSKVQARSFTPLPIVYALLAQAHGSLGSKEKWKKNLRLEWFCWPPEMRPAEVYFQMHILARESEERPETTSGIENCQTSEKWVLRAIHTNPSCMRYWNVLDKLVQYPIS